Your best bet is just downloading each update in the nma thread I sent you. I downloaded the original mirrors and I have been updating manually through the nma thread. If a new update requires new files, it will tell you to download them, just get all the ones like like that.
Once you are sure it is patched up correctly, make sure you set up your settings in FOconfig.exe. Change the language to English, direct the paths to master.dat and critter.dat, and make sure the IP and port is correct and then you can tweak anything else you want really.